Re: [Freesurfer] EasyReg Troubleshoot - Killed

External Email - Use Caution Hi, Would you be able to provide any more insight to this? I'd like to see if I could get it working on my dataset. Thanks! Nadia Nadia Kane Junior Imaging Specialist University Imaging Centers | University of Minnesota https://secure-web.cisc

[Freesurfer] mri_synthmorph

External Email - Use Caution Hi, I tried using mri_synthmorph in FreeSurfer on synthetic mouse brain data, but my output moved image is just black pixels. Thanks, Nadia Nadia Kane Junior Imaging Specialist University Imaging Centers | University of Minnesota https://secure

Re: [Freesurfer] mri_robust_register for mouse brain?

f you are inside the NMR-Martinos Center, make sure to source the standard environment. A path to an alternative license file can also be specified with the FS_LICENSE environmental variable. Nadia Kane Junior Imaging Specialist University Imaging Centers | University of Minne

[Freesurfer] mri_robust_register for mouse brain?

External Email - Use Caution Hi, Can mri_robust_register be used for mouse brain atlas affine registration? What criteria need to be considered? Thanks, Nadia Nadia Kane Junior Imaging Specialist University Imaging Centers | University of Minnesota https://secure-web.cisco.com

Re: [Freesurfer] EasyReg Troubleshoot - Killed

y", line 552, in inv ainv = _umath_linalg.inv(a, signature=signature, extobj=extobj) File "/scratch.global/tpengo/freesurfer/python/lib/python3. 8/site-packages/numpy/linalg/linalg.py", line 89, in _raise_linalgerror_singular raise LinAlgError("Singular matrix") numpy.l

[Freesurfer] EasyReg Troubleshoot - Killed

External Email - Use Caution Hi, I'm working on applying deep learning in image registration for a master's project. The overarching goal was to use real tissue clearing lightsheet data to perform the image registration, but first created some synthetically deformed brains based on