laying them on
> fsaverage. If there is a template brain used by BV, then you can try
> running that through recon-all. If that works, you can create a label
> file for the BV template, then map it to fsaverage or other subjects
> using mri_label2label
>
> doug
>
> On 03/16
Hi all,
I'm working with BrainVoyager and Freesurfer. I have some Talairach
coordinates from BV for a functional ROI, and I'm trying to see if I can
use these coordinates in Freesurfer to draw the same ROI on the structural
slices. Is this possible?
Alternatively, is it possible to draw a sphere
Hi all,
I'm trying to run recon-all on some data using one of the hpc clusters at
my institution using FreeSurfer v. 5.3.0. I've used 4.5.0 without a problem
but I'm trying to rerun the data with the new version.
I keep getting this error (FreeSurfer's log file is attached here)
regarding the mni
llowing command:
> echo $FREESURFER_HOME
>
> -Zeke
>
>
> On 10/25/2013 04:09 PM, Natalie Garcia wrote:
>
>> Hi all,
>>
>> I've tried running auto-recon with version 5.3.0 (on Mac OSX v10.8.2)
>> and the processing stream seems to fail at the intensity co
Hi all,
I've tried running auto-recon with version 5.3.0 (on Mac OSX v10.8.2) and
the processing stream seems to fail at the intensity correction point. Not
sure if it helps, but when I look at the output from the PBS script, I see
"nu_correct: Command not found."
Any suggestions on what I might
Dear all,
I've been using Freesurfer v4.5.0 for some time and have reconned about 100
participants. I am wondering if there is an automatic way to obtain the
total gray matter volume for all the subjects I have run so far under this
version, or would it be necessary to update to v5.2?
Any help wo
Dear FreeSurfers,
I have a very basic question (which I'm hoping also has a basic answer!):
I know that the Talairach coordinates provided in tksurfer are based on a
conversion using MNI space, but I'm wondering: is there a way to input
specific Talairach coordinates into Freesurfer to identify a
