[Freesurfer] Postdoctoral Position in Australia

models of neuro-cognitive ageing. Working closely with Dr Nicolas Cherbuin, the research involves, processing and analysing structural brain scans and conducting research with a dynamic multi-disciplinary team. The successful applicant will hold a PhD in Psychology or equivalent and will have

[Freesurfer] Correlating two surfaces in glmfit

Hi I am not sure my last query below was circulated to the list. If somebody has an answer it would be great. Cheers Nic _ From: Nicolas Cherbuin Sent: Friday, 11 September 2009 10:49 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Correlating two surfaces Dear All

[Freesurfer] Correlating two surfaces

Dear All, I would like to correlate two surfaces with glmfit e.g. thickness and curvature but I don't seem to be able to find any document explaining how to do that. Could you please point me in the right direction? Thanks Nic ___

[Freesurfer] freesurfer vs manual tracing

Dear All, A paper comparing freesurfer hippocampal segmentation to manual tracing in a large middle-aged population was published today in PLOSONE and may be of interest to this list. Regards, Nic http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.00052 65

[Freesurfer] segmentation protocol for the hippocampus

Hi, Where can I find the protocol used to segment the hippocampus in freesurfer? I am comparing manually traced hippocampi to fs segmentation and I am interested to know whether differences are due to the protocol used or other factors. Thanks Regards, Nic Nicolas Cherbuin

RE: [Freesurfer] mri_glmfit problem

. I really appreciate yours and your team's efforts both in developing great software and answering questions from challenged users like myself. Regards, Nic -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Wed 3/12/2008 5:34 AM To: Nicolas Cherbuin Cc

[Freesurfer] mri_glmfit problem

Hi, I am analysing structural data with mri_glmfit. After pre-processing I have first used one group variable (gender) with one covariate age. I had no problem processing the data and visualising it in tksurfer. I then tried to add another covariate (measure of immediate recall). So I had in

RE: [Freesurfer] FW: qdec segmentation faults

Hi Nick, Yes, I am using the 64 bit fs. I will try your fix and keep you updated. Thanks very much for your help. Regards, Nic -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: Thu 3/6/2008 3:17 AM To: Nicolas Cherbuin Cc: Freesurfer Mailing List

RE: [Freesurfer] reprocessing on FS4.0 takes much longer for some scans

failure which interupted processing towards the end of autorecon2? Thanks Nic -Original Message- From: Bruce Fischl [mailto:[EMAIL PROTECTED] Sent: Sun 11/11/2007 4:30 PM To: Nicolas Cherbuin Cc: freesurfer@nmr.mgh.harvard.edu Subject:Re: [Freesurfer] reprocessing

RE: [Freesurfer] Ubuntu, Xeon 64bit multi-core, and freesurfer

. Regards, Nic -Original Message- From: Nick Schmansky [mailto:[EMAIL PROTECTED] Sent: Tuesday, 31 July 2007 12:07 PM To: Nicolas Cherbuin Cc: Freesurfer Mailing List Subject: Re: [Freesurfer] Ubuntu, Xeon 64bit multi-core, and freesurfer Nic, Concerning Ubuntu and Freesurfer, we have

[Freesurfer] Ubuntu, Xeon 64bit multi-core, and freesurfer

be interested to hear about it. Thanks Nic * Nicolas Cherbuin Centre for Mental Health Research Australian National University Canberra ACT 0200 ___ Freesurfer mailing list Freesurfer

[Freesurfer] 3D visualisation

Hello, I would like to visualize subcortical structures, particularly the hippocampus, in 3D. Is there an available function to display a glass brain with solid internal structures and/or is it possible to extract this information from the freesurfer files? If yes where could I find the

[Freesurfer] freesurfer course

Dear Freesurfers, I am trying to plan international travel for next year. Can somebody inform me of when the next freesurfer courses will take place in 2007? Thanks Nic ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] automatic processing

Hi, I have to process more than 500 good quality scans (1mm isotropic) for an epidemiological study and have limited time resources. Initial processing of 20 scans seems promising but I am new to freesurfer and therefore I am not quite sure how significant small defects might be in the big

[Freesurfer] Using different image acquisitions

Hello, Is it possible to coregister a combination of T1, T2, and Flair images to obtain better results? Also, is it possible to assess freesurfer's precision by processing separately a T1 and Flair image in the same subjects taken at the same time and comparing their measures? Thanks Nic

[Freesurfer] Freesurfer and 64 bits Itanium processors

Hi I need to process a large number of scans which could take me a lifetime with my current worksation. I could have access to a linux cluster of Itanium 64 bits machines. However, presently a distribution for Itanium processors does not seem to be available. Is there a possibility to