Re: [Freesurfer] Individual regions of CorticalParcellation_Yeo2011

2016-01-05 Thread Parker, Richard
providing the split region ROI files! Best wishes, Richard Parker Richard Parker Postgraduate Research Student Maurice Wohl Clinical Neuroscience Institute King's College London Telephone: 07943515208 Email: richard.r.par...@kcl.ac.uk ___ Frees

Re: [Freesurfer] Individual regions of CorticalParcellation_Yeo2011

2015-12-14 Thread Parker, Richard
from your email. (This might actually work better). Thanks, Thomas On Fri, Dec 11, 2015 at 12:51 AM, Parker, Richard wrote: > Hi Professor Yeo, > > > > Thanks for providing a link to your split region MNI space files. > > > > Could you please advise on how to get

Re: [Freesurfer] Individual regions of CorticalParcellation_Yeo2011

2015-12-10 Thread Parker, Richard
Hi Professor Yeo, Thanks for providing a link to your split region MNI space files. Could you please advise on how to get these labels into subject native space? If using the standard version of the network labels that comes packaged with Freesurfer 5.3.0, I can get the annotation file into nat

[Freesurfer] T1-coregistered fmri - output to .nii

2015-10-27 Thread Parker, Richard
Hi Freesurfers, I am interested in running a functional connectivity analysis outside of the Freesurfer environment, using freesurfer-derived ROIs I've run recon-all, and I have run preproc-sess to carry out initial fmri preprocessing steps (motion correction, warping to the anatomical, etc)

[Freesurfer] Using external software to perform brain extraction

2015-09-23 Thread Parker, Richard
Greetings Freesurfer Gurus, I'm having a little trouble with a small minority of my subjects whereby dura is being classed as cortical surface . I've played around with gcut and the watershed parameters, but have so far been unable to achieve a satisfactory cleanup. Before I give up and inve