...@nmr.mgh.harvard.edu]
Sent: maandag 27 mei 2013 14:19
To: Popescu, Veronica
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] recon-all with FLAIR error no FSL installed
Hi Veronica
thanks for the offer, but I don't need to see them. Glad it seems to be
working. As for BBR, I'll
[mailto:fis...@nmr.mgh.harvard.edu]
Sent: vrijdag 24 mei 2013 15:59
To: Popescu, Veronica
Cc: 'freesurfer@nmr.mgh.harvard.edu'
Subject: Re: [Freesurfer] recon-all with FLAIR error no FSL installed
Hi Veronica
BBR can use FSL or SPM to initialize, although we'll probably add an option
, 2013 15:02
To: Popescu, Veronica
Cc: 'Watson, Christopher'; 'freesurfer@nmr.mgh.harvard.edu'
Subject: RE: [Freesurfer] pial surface with FLAIR
Hi Veronica
what recon-all command lines did you run? You did run it with a T1 first, right?
Bruce
On Tue, 16 Apr 2013, Popescu, Veronica wrote:
Hi
Dear all,
I have already run the FreeSurfer 5.2 -all, and I would like to improve the
pial surface recongition using the FLAIR. From the $SUBJECTS_DIR (where I have
also placed the FLAIR file) I use the following syntax:
recon-all -autorecon3 -subjid ${SUBJ_ID} -FLAIR $FLAIRFILE -FLAIRpial
It
