[Freesurfer] mri_vol2surf warning

2018-05-02 Thread Rachel Bencic
External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to resample beta weights generated from AFNI’s 3dDeconvolve command to individual subjects’ cortical surfaces. Prior to running 3dDeconvolve, I ran bbregister to coregister subjects’ (unwarped) functional d

[Freesurfer] Misalignment between functional and anatomical data with bbregister

2018-01-26 Thread Rachel Bencic
Dear Freesurfer Team, I am an image processing novice and am trying to register resting-state data to an anatomical scan using bbregister. The T1s have been run through Freesurfer's reconall pipeline, and the EPIs have undergone the following preprocessing steps: - slice time correctoin - deobliqu