Re: [Freesurfer] "-atlas" argument and help with multiple errors running recon-all

External Email - Use Caution and also, where can I find the documentation for the argument -atlas that the log proposed I should use? Couldn't find it anywhere... On Wed, Sep 13, 2023 at 5:05 PM Rona Haker wrote: > Thanks, I have already read this and tried to per

Re: [Freesurfer] "-atlas" argument and help with multiple errors running recon-all

LOVrr8agLP0RsNfxinekhl4cL34_t-ZzSoffLkqFmj8F-0OUuxklCU9ixROLbS5JUID7ZsLA4kbFNudqpg7dFPXlIDMqf6StF7q7lpNxQ1q84UcWkFeaWLmtXwHejUh-fR9fpE9HPWyQh1Hdkw0C8qEbvmGyWCJ9aMMAhAHiPukgZO6wbjF3Od71wKasMz7D7p5Ln0CyD6QrvbZrifBPHDiJuJZetRi042UrvhhuneV8xQ/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FTopologicalDefect_freeview

[Freesurfer] keep T1w matrix size during recon-all (without zero-padding)

External Email - Use Caution Hi, Can recon-all be performed without zero-padding the final matrix aparc+aseg in order to keep the original T1w matrix size? This will greatly help me in further analyses. Thank you! ___ Freesurfer mailing l