register.dat. What is the stream line or commands to do that?
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Best Regards
Rouhollah Abdollahi
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The information in this
voxels hit = 122086
Warning: all vertex values are zero
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Best Regards
Rouhollah Abdollahi
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The information in this
segmentation files and all surfaces. I think I need all surfaces to be able
to use label2label command.
one surface that I have, shows the lh.pial has 170783 vertices and it could
be created in 2010 or before. Could you help me about that?
--
Best Regards
Rouhollah Abdollahi
Dear freesurfer experts
I've tried to export my label file from individual space to fsaverage space
by using this command:
mri_label2label --srclabel rh.V1.label --srcsubject SUB1
--trgsubject SUB1 --trglabel rh.V1_reg.label --regmethod surface
--srcsurfreg sphere --trgsurfreg sphere.reg --hem
liance
> HelpLine at
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With Best Regards
Rouhollah Abdollahi
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?h.sphere.reg ) I think it is very important to add it to recon-all because
if the user doesn't know the real oriantation it might make such a problem.
Thanks for your quick response.
On Thu, Aug 11, 2011 at 10:45 AM, Rouhollah Abdollahi wrote:
> Dear Bruce
>
> I am working on Freesurfer 2 c
want that
mris_register does not apply any rigid alignment after initial rotation what
I have to do?
Thanks
Rouhi
On Thu, Aug 11, 2011 at 9:25 PM, Bruce Fischl wrote:
> What format is the attachment in?
>
>
>
> On Aug 11, 2011, at 8:32 PM, Rouhollah Abdollahi
> wrote:
>
>
tialize with the tal xform, but we never use it as in pretty extensive
> tests it didn't seem to help. mris_register has a very large initial capture
> range due to it's global search, so I would be surprised if the initial
> orientation was the problem.
>
>
> cheers
> B
the newly created surfaces. Not sure, we haven't ever had to do
> anything like this.
>
>
> On Fri, 12 Aug 2011, Rouhollah Abdollahi wrote:
>
> Dear Bruce
>> I think the easiest way is to create all surfaces again but with corrected
>> and well aligned brain. Th
I tried to rotate the surface by tksurfer and save it as new file . But when
I open the new surface like white it was not rotated.
Is there any special thing that I have to do?
Best
Rouhi
On Fri, Aug 12, 2011 at 2:24 PM, Rouhollah Abdollahi wrote:
> Dear Bruce
> If I want to rotate
ave the correct rigid orientation before
>> the registration proceeds.
>>
>>
>>
>> Thanks,
>>
>>
>> Matt.
>>
>>
>>
>>
>> __**__**
>> __**______**
>> _
>>
>>
>> From:
>> freesurfer-boun...@nmr.mgh
27;ll take a look
> On Sat, 13 Aug 2011, Rouhollah Abdollahi wrote:
>
> Hi BruceI think the aseg is good but only rotated 90 degree. I will try
>> to rotate sphere to see how it will create sphere.reg.
>>
>>
>>
>> On Sat, Aug 13, 2011 at 1:02 AM, Bruce Fischl
Sat, 13 Aug 2011, Rouhollah Abdollahi wrote:
>
> where can I upload one subject? which I have problem with that subject in
>> RH registraton.
>>
>> On Sat, Aug 13, 2011 at 10:30 PM, Bruce Fischl <
>> fis...@nmr.mgh.harvard.edu> wrote:
>> if the as
lpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
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