Hi all,
Upon creating my .nii file from my Siemens MPRAGE data using mri_convert,
and opening nii file in freesurfer,
I notice that the sagital view has the wrong orientation.
What I mean is that on teh scanner I can see nose on left side of image, but
on freesurfer I see nose on right.
I am usin
Hi,
I have upgraded to v5.0 assuming that I'll be in a better shape now.
I issued this command:
nohup recon-all -s ../NanditaGoodDataSetSubject5.0_run2 -i ./t1_svs.nii
-autorecon-all &
which failed after a while . I used nohup so that I can close shell with
terminating the calculation.
The ta
Hi freesurfer-ers:
when you run something like:
*bbregister --s MySubject --t1 --mov t1_svs.nii --init-fsl --reg t1.reg.dat*
**
I expect to generate a file "t1.reg.dat".
bbregister is exiting normally with no error message.
Where is this file? I cannot find it.
Thanks in advance.
Saad
___
wrote:
> but you don't know what else was running on the same node at the time, do
> you? Can you lock the amount of memory you will need? I think to be safe you
> want 3G, but maybe Nick can chime in
>
>
> On Thu, 7 Apr 2011, Saad Ramadan wrote:
>
> Hi Bruce,
>>
&g
Dear all,
I ran (on an isotropic MPRAGE ):
recon-all -subject mysubject -i
./DICOM/test.25.1.2010.04.27.21.51.18.31250.14004670.IMA -autorecon-all
which ran for few hours and then exited without a successful end as can be
seen on log file below.
Contents of *recon-all-status.log* are:
Wed
Hi,
I have recently installed freesurfer 5.0.0 on top of a Xubuntu Linux
distribution on an virtualBox/WIN XP computer.
I can run freesurfer without a problem.
My problem is with accessing Host drives from linux system. How am I going
to get the image data to my linux virtual system if I cannot a
