[Freesurfer] Freesurfer stats into REDCap

recon-stats to do just that. Hope at least someone else out there can find this useful! Scott Burns Sr. Research Imaging Specialist Education and Brain Science Research Laboratory Vanderbilt University Nashville, TN ___ Freesurfer mailing list Frees

[Freesurfer] Bug in mri_info?

orrectly reading MPRAGE_new.nii as float data. Not an earth shattering bug by any means, but I thought I'd let you know anyways. Scott Burns Kuperberg Lab Martinos Center for Biomedical Imaging sbu...@nmr.mgh.harvard.edu The information in this e-mail is intended only for the person to who

Re: [Freesurfer] selxavg3 can't find image that exists

nals/log/selxavg3-sess-ATLLoc-ya.ATLLoc.spm.sm8.lh-110410191908.log >> Sun Apr 10 19:19:09 EDT 2011 >> >> if ( ! -d $sess ) then >> if ( ! -d /autofs/cluster/kuperberg/SemPrMM/MRI/functionals/ya24 ) then >> >> set funcdir = $sess/$fsd >> set funcdir = /autofs/clu

[Freesurfer] selxavg3 can't find image that exists

tions 4 parname atlloc.par RefEventDur 2 timewindow 40.00 prestim 0 TER 0.05 spmhrf 0 stimulusdelay 0 Condition 1 Condition01 Condition 2 Condition02 Condition 3 Condition03 Condition 4 Condition04 nuisreg mcprextreg 3 Thanks for the help. Scott Burns Kuperberg Lab Martinos Center for Biomedi

Re: [Freesurfer] running in the background?

You can make it work with nohup? In the past I've had trouble and my thinking was that because recon-all starts many child processes, the currently continues after the terminal is closed, but any subsequent process can't start. That's why I've been using screen, but YMMV. S

Re: [Freesurfer] running in the background?

mand prompt to reattach to the screen session you created previously. A new terminal will open and will contain all the output from the recon pipeline. Good luck. Scott Burns Kuperberg Lab Martinos Center, MGH sbu...@nmr.mgh.harvard.edu The information in this e-mail is intended only for the p