[Freesurfer] using BET prior to recon-all?

I've been having problems with a few brains (errors during processing). I found advice on the web about running BET (the FSL brain extraction tool) prior to running recon-all http://lcni.uoregon.edu/mediawiki/index.php/SOFT:FSL_FreeSurfer I've tried this and that has helped. (Searching the

Re: [Freesurfer] using BET prior to recon-all?

estimation. Do you find our skullstripping is failing? In our hands the current version is extremely robust - working on 99% of the brains we test. cheers, Bruce On Thu, 13 Dec 2007, Simon Rushton wrote: I've been having problems with a few brains (errors during processing). I found

[Freesurfer] Re: Freesurfer Digest, Vol 47, Issue 2

I feel somewhat uneasy simply assuming that the process worked just because it didn't exit with an error. Is my concern misplaced? Should I feel happy about submitting a ms based on freesurfer analyses that have not been independently checked? If it is necessary/advisable to do some indep

Re: [Freesurfer] Re: Freesurfer Digest, Vol 47, Issue 2

x27;t stop in the middle to do so anymore. Bruce On Wed, 2 Jan 2008, Simon Rushton wrote: I feel somewhat uneasy simply assuming that the process worked just because it didn't exit with an error. Is my concern misplaced? Should I feel happy about submitting a ms based on freesurfer