[Freesurfer] aparc & wm underestimation

2024-03-03 Thread Stanica, Maria
External Email - Use Caution Hello FS developers, I ran my subjects through skullstripping and recon-all. Everything processed correctly (and exited without errors), except 4 images which have an underestimation in coronal subcortical region. The underestimation is significant

Re: [Freesurfer] aparc & wm underestimation

2024-03-05 Thread Stanica, Maria
9 PM, Stanica, Maria wrote: External Email - Use Caution This is after the most recent round of edits for one of the subjects. Maria Stǎnicǎ, B.A. | Graduate Student Medical/Clinical Psychology Doctoral Program UAB |The University of Alabama at Birmingham mstan...@uab.edu<mailt

Re: [Freesurfer] aparc & wm underestimation

2024-03-16 Thread Stanica, Maria
tvol mrisps.pial.mgz And pass that to recon-all with the -expert option On 3/5/2024 7:10 PM, Stanica, Maria wrote: External Email - Use Caution Yes, the problem is that the white surface on the left side of the image is extending too far into subcortical gray matter. We did delete the con