Hello, I am trying to obtain estimates for the local gyrification index (LGI) using Freesurfer. I have tried to compute LGI via two different commands... "mris_compute_lgi --i lh.pial" and " recon-all -lgi -s subjectName." Both of these return the same error after running for a while...
.......... Saving label file /......../FS/subjects/test/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.029901.label Connecting and filling vertices in path at fillseed 69178 Finding path..................................................................................................................................................................................................................................................................................................................................................................................... done Filling 69178 nlabel 9709 Saving label file /......../FS/subjects/test/surf/tmp-mris_compute_lgi-lh.pial/lh.pial.030001.label Connecting and filling vertices in path at fillseed 68070 Finding path.............................................................................................Killed ERROR: mri_path2label --confillxfn lh.pial /......../FS/subjects/test/surf/tmp-mris_compute_lgi-lh.pial/mri_path2label.input failed! I've tried a couple of subjects and I get the error above. Would anyone please be able to offer suggestions regarding how to resolve this issue? Many thanks for taking the time to read my inquiry. Nick _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
