Re: [Freesurfer] Error when using --mask flag in mri_glmfit

2013-11-14 Thread Suzanne Oosterwijk
gt; doug > > > > On 11/01/2013 09:51 AM, Suzanne Oosterwijk wrote: > >> >> Hello again, >> >> I am stuck again in my analysis and I am not sure that my code is right. >> I want to do the following. With a Monte Carlo simulation I search for >> signifi

Re: [Freesurfer] [martinos-tech] parametric modulation

2013-10-31 Thread Suzanne Oosterwijk
> > On 10/29/2013 10:44 AM, Suzanne Oosterwijk wrote: > >> Hi Doug, >> >> Attached is the Xtmp.mat file for the analysis that gets the error. >> >> Thanks for your response on the second question. I am not sure what you >> mean with demeaning, so I guess

[Freesurfer] Error when using --mask flag in mri_glmfit

2013-10-29 Thread Suzanne Oosterwijk
his, I get the following error: ERROR: dimension mismatch 1 between y and mask I guess this means that the ces.nii.gz file and mask file don't match, but I have no idea how to solve this. Any thoughts? Thanks! Suzanne -- Suzanne Oosterwijk, Ph.D. Postdoctoral Researcher Depar

Re: [Freesurfer] [martinos-tech]

2013-09-11 Thread Suzanne Oosterwijk
hanks, Suzanne On Wed, Sep 11, 2013 at 12:08 AM, Douglas N Greve wrote: > Hi Suzanne, I'll cc the FS list so others can benefit ... > > > On 09/09/2013 06:02 AM, Suzanne Oosterwijk wrote: > >> Hi Doug, >> >> I have two follow-up questions to enhance m

Re: [Freesurfer] [martinos-tech] checking talairach registration

2012-05-30 Thread suzanne oosterwijk
nne, it does not mean that there is anything wrong with your data. > I've seen this before on some data sets. I have a work-around that might > work. How many data sets do you have to run? > doug > > > On 05/29/2012 02:35 PM, suzanne oosterwijk wrote: > >> >> Hi

[Freesurfer] error when running funcroi-table-sess

2011-04-15 Thread suzanne oosterwijk
R_insula_g_mni.bfvsfix_script.dat -sf sessid I have tried many things to see what I am doing wrong, but I can't figure it out. Thanks for any help! Suzanne -- Suzanne Oosterwijk, Ph.D. Postdoctoral Researcher Interdisciplinary Affective Science Lab Department of Psychology Northeastern University 114 Lake

[Freesurfer] recon1: brain missing

2010-11-19 Thread suzanne oosterwijk
cloning the T1 (aux volume) as is explained in the Freesurfer tutorial. Still, I wonder whether this is the best solution, and why this is happening in the first place. I appreciate any help or feedback on this. Thanks in advance! kind regards, Suzanne Oosterwijk -- Suzanne Oosterwijk