[Freesurfer] Including superficial white matter in cortical parcellation

External Email - Use Caution Dear Freesurfer Experts, I am interested in generating a volumetric segmentation and parcellation of the HCP-MMP1 atlas using mri_surf2volseg - and I have previously done this like so: mri_surf2volseg --o $sub/HCP-MMP1_fsSpace.mgz \

[Freesurfer] Thalamic segmentation in FS voxel space

External Email - Use Caution Dear All, I have run segmentThalamicNuclei.sh on a set of subjects with 1mm isotropic T1 images. I need to convert these labels into volumetric space for further analysis so have been using the output with the FSvoxelSpace suffix and converting .mgz