Re: [Freesurfer] Pial and White surface maps are not found

2023-06-21 Thread Varun Chandran
External Email - Use Caution p.s. I am wondering whether this specific issue arises while working with freesurfer using Linux based Virtual Machine? On Wed, Jun 21, 2023 at 4:47 PM Varun Chandran wrote: > Hi Yujing > > Thank you very much for your quick reply. Ye

[Freesurfer] Pial and White surface maps are not found

2023-06-21 Thread Varun Chandran
External Email - Use Caution Hi FS experts, It's been a few years, I used FS tools for cortical surface reconstruction. Now, when I used the freesurfer 7.2 version to perform cortical surface reconstruction on the T1-weighted structural MRI data, I was unable to obtain the

Re: [Freesurfer] mri_glmfit and mri_glmfit-sim

2020-03-17 Thread Varun Chandran
the > MCZ simulation. I would use permutation. See > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm > > On 3/12/2020 6:30 AM, Varun Chandran wrote: > > External Email - Use Caution > Dear FS experts, > > I am looking

Re: [Freesurfer] mri_glmfit and mri_glmfit-sim

2020-03-14 Thread Varun Chandran
s://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm > > On 3/12/2020 6:30 AM, Varun Chandran wrote: > > External Email - Use Caution > Dear FS experts, > > I am looking at the relationship between the cortical thickness and a > behaviour measur

[Freesurfer] mri_glmfit and mri_glmfit-sim

2020-03-12 Thread Varun Chandran
External Email - Use Caution Dear FS experts, I am looking at the relationship between the cortical thickness and a behaviour measure, while controlling for the effects of age and gender. In this analysis, I am using CT_AT.fsgd, contrast_pos.txt and a contrast_neg.txt.

[Freesurfer] Request for access to the freesurfer mailing list

2020-02-14 Thread Varun Chandran
External Email - Use Caution Dear Freesurfer committee, I would like to use the freesurfer mailing list to post my doubts about the cortical thickness analysis pipeline. Therefore, could you please provide me the access to post my doubts on the same?