Hello Antti,
It may be possible that you’ve run out of space and the full volumes were not
written. You can check by using: df -h /path/to/file
Similarly, you can run mri_info on the input files to see how many frames there
are and where the discrepancy between the volumes set to x and y are
Hello Hanne,
I’ll take a look with you and hopefully we can figure this out. Just to
clarify, the mris_divide_parcellation outputs lh.aparc.splittedinsula.annot,
but this is saved as a text file like lh.aparc.splittedinsula.txt?
Thanks so much!
Matt
From:
Hello Claudia,
It may be due to FreeSurfer not being sourced properly within your terminal. If
you are working in a Cshell environment, source FreeSurfer with these commands:
You can make sure you’re in Cshell by typing tcsh.
setenv FREESURFER_HOME /freesurfer
source
Hi Xiaojing,
You should be able to rename them! It’s important to note that all of you log
text files saved in your subjects’ script directory will reflect the original
directory names – but if your output looks good and recon-all completed without
errors, you can go right ahead. If you
