Re: [Freesurfer] trac-all -stat

2017-04-13 Thread Versace, Amelia
specified a list) for the subjects that you've specified in your config file. It'd be looking under: /data/dprojects/BIOS/tracula/$subj/dpath/ Best, a.y From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of

[Freesurfer] trac-all -stat

2017-04-12 Thread Versace, Amelia
Hi Anastasia, I am having some issues with the -stat option. Below is the error. I am not sure of what's causing the issue. Any idea? Thanks a lot!! Amelia - trac-all -c scripts/dmrirc.stats -stat INFO: SUBJECTS_DIR is /data/dprojects/BIOS/freesurfer INFO: Diffusion root is

Re: [Freesurfer] epidewarp.fsl for FSL 5.x

2016-03-01 Thread Versace, Amelia
Hi, I am having the same issue. Can you please upload the updated version of epidewarp.fsl for FSL 5.x. Thanks a lot, Amelia From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve Sent: Wednesday, February 10, 2016 10:58 PM To:

[Freesurfer] [Tracula] pathstats.byvoxel.txt for between-group or correlational analyses

2015-08-04 Thread Versace, Amelia
Dear Anastasia and Tracula experts, I would like to run between-group statistics using the pathstats.byvoxel.txt outputs. It is clear from the website how to manage the NANs. However, what would you suggest to use for between-group or correlational analyses? Is there a

[Freesurfer] network analysis in tracula

2015-05-22 Thread Versace, Amelia
Dear Anastasia, Is there a way to get connectivity matrices using the outputs of tracula? Thanks a lot, Amelia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in

Re: [Freesurfer] Tracula: missing or incomplete tracts

2015-03-27 Thread Versace, Amelia
version (that you can download on the web site). a.y On Thu, 12 Mar 2015, Versace, Amelia wrote: Dear Anastasia, I was wondering if there is a way to automatically (in command line) derive the FA/V1 vector image. fslview FA.nii.gz V1.nii.gz allows to load the FA and V1 image

Re: [Freesurfer] Tracula: missing or incomplete tracts

2015-03-12 Thread Versace, Amelia
Dear Anastasia, I was wondering if there is a way to automatically (in command line) derive the FA/V1 vector image. fslview FA.nii.gz V1.nii.gz allows to load the FA and V1 image, but then manual section of the (lines) is needed. freeview -dti V1 FA does it too (with different