Re: [Freesurfer] ERROR: matrix is ill-conditioned or badly scaled, condno = 1e+08

2014-03-11 Thread Wanda Truong
. Is that correct? I've attached a > linux-compatible version. Let me know if that works. > doug > > > > On 03/11/2014 12:19 PM, Wanda Truong wrote: > >> Hello, >> >> I would like to conduct an analysis using mri_glmfit but I'm getting this >> erro

[Freesurfer] ERROR: matrix is ill-conditioned or badly scaled, condno = 1e+08

2014-03-11 Thread Wanda Truong
ge lh --cortex --glmdir lh.surfacearea.glmdir My FSGD file is attached. It contains 3 classes and 1 variable (age). And my design matrix is 1 -1 0 0 0 0 1 0 -1 0 0 0 Please help! Thank you for your time, Wanda -- Wanda Truong, MSc finalgroupanalysis.fsgd Description: Binary

Re: [Freesurfer] LGI ERROR: make_roi_paths did not complete successfully!

2014-01-31 Thread Wanda Truong
mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg30506.html > and copy it in the $FREESURFER_HOME/matlab folder (replace the older one > with this one). > > Let me know how it works, > > Marie > > On Jan 30, 2014, at 1:50 PM, Wanda Truong > wrote: > > Hello Mari

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-30 Thread Wanda Truong
wrote: > > That should be enough space. Can you try it with the other half? I'm > thinking it might be one subject who is messing things up. > > On 01/30/2014 04:04 PM, Wanda Truong wrote: > > Hi Doug, > > > > I currently have 40.64 GB of disk space (is this enou

[Freesurfer] LGI ERROR: make_roi_paths did not complete successfully!

2014-01-30 Thread Wanda Truong
23 16:25:48 PDT 2012; root:xnu-1699.32.7~1/RELEASE_X86_64 x86_64 recon-all -s SFS026 exited with ERRORS at Thu Jan 30 14:26:16 MST 2014 Thanks, Wanda -- Wanda Truong, MSc ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mg

Re: [Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-30 Thread Wanda Truong
; with, say, half the subjects? Does this always occur or is it just > recently? > > doug > > > On 01/28/2014 04:36 PM, Wanda Truong wrote: > > Hi Doug, > > > > Attached is the full error message I get, starting from mris_preproc. > > > > Thanks!! &g

[Freesurfer] ERROR: dimension mismatch between y and X.

2014-01-28 Thread Wanda Truong
/Wanda_SFS/qdec/Untitled/mask.mgh Reshaping mriglm->mask... search space = 73649.347769 ERROR: dimension mismatch between y and X. y has 3528 inputs, X has 49 rows. My QDEC table has 49 subjects,2 groups, and 4 variables. Many thanks, Wanda -- Wanda Truong,

[Freesurfer] QDEC error loading y

2014-01-27 Thread Wanda Truong
-- Wanda Truong, MSc ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail

[Freesurfer] Fwd: QDEC error

2014-01-23 Thread Wanda Truong
-- Forwarded message -- From: Wanda Truong Date: 23 January 2014 16:57 Subject: QDEC error To: freesurfer@nmr.mgh.harvard.edu Hello, I am having trouble with my group analysis using QDEC. I have 3 groups, 72 subjects, and 4 covariates. This is the error I get: Loading data