[Freesurfer] Parcellation to FS surface annotation

2019-06-18 Thread Williamson, Brady
External Email - Use Caution Hello, I am trying to convert parcellations in MNI space (BrainNetome and Craddock 200) to a surface annotation file in fsaverage space. I have seen several posts that seem to talk about steps that may be applicable but none of them are very efficie

[Freesurfer] mri_glmfit in custom ROI

2019-03-20 Thread Williamson, Brady
External Email - Use Caution Hi, I have a couple of specific questions about mri_glmfit that I could not quite find the answers to in the tutorials or message boards. 1. How would I run mri_glmfit in a custom ROI (or set of ROIs) and then correct for multiple comparisons? I

Re: [Freesurfer] Problem with freeview in linux subsystem for

2019-02-20 Thread Williamson, Brady
External Email - Use Caution Hi Falk, Thank you for the reply. Yes, I am running Xming and have set this option in the .bashrc file. I still get the same error. I have tried to research this issue extensively but cannot seem to find the answer. Thanks, Brady ___

[Freesurfer] Problem with freeview in linux subsystem for windows

2019-02-19 Thread Williamson, Brady
External Email - Use Caution Hi, I am trying to run freeview in the linux subsystem (Ubuntu 18.04) for windows 10 but keep getting the following error: failed to get the current screen resources QXcbConnection: XCB error: 170 (Unknown), sequence: 170, resource id: 90, major cod

Re: [Freesurfer] Pediatric Cortical Thickness Normalization by ICV

2019-02-14 Thread Williamson, Brady
, Williamson, Brady wrote: > External Email - Use Caution > > Got it, that exactly what I was looking for! Thank you very much. > > -Original Message- > From: freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf O

Re: [Freesurfer] Pediatric Cortical Thickness Normalization by ICV

2019-02-14 Thread Williamson, Brady
from the aseg.stats file Then specify --meas thickness.etiv.mgz when running mris_preproc On 2/14/19 12:50 PM, Williamson, Brady wrote: > > External Email - Use Caution > > Hi, > > I am running an analysis in a group of pediatric subjects (4-6 years > old) and wan

[Freesurfer] Pediatric Cortical Thickness Normalization by ICV

2019-02-14 Thread Williamson, Brady
External Email - Use Caution Hi, I am running an analysis in a group of pediatric subjects (4-6 years old) and want to correct cortical thickness values by ICV before running the statistical model, since we have limited degrees of freedom. While I know this is not recommended f