[Freesurfer] skull strip problem

2009-04-28 Thread Wilson, Benjamin
Hi, I am trying to run freesurfer on some SPGR sequences that I have on a few subjects. I managed to import and convert the DICOM files to .mgz with success, but when I ran the skull strip I have a significant amount of skull left in some places and a large chunk of brain missing in other

[Freesurfer] Repost-Segfault Error

2008-10-21 Thread Wilson, Benjamin
Hi All, I reposted this a little earlier but I thought I would repost with all the information that I have I am running freesurfer on a 64 bit linux machine with 2 quad core Intel Xeon processors and 16 GB of RAM I have run the recon-all command on all of my images without any problems

[Freesurfer] Segfault Error

2008-10-20 Thread Wilson, Benjamin
Hello all, I am hoping that somebody may be able to help me out with this problem. I am new to freesurfer so please excuse if this is a newbie question. I have run recon-all on my subjects to create the appropriate .mgz files needed for analysis, but now when I try and view these files