I'm trying to convert a group of .dcm files to .nii.gz, but I've been getting the following output with an error at the end...
mri_convert IM-0020-0001.dcm example.nii.gz $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from IM-0020-0001.dcm... Starting DICOMRead2() dcmfile = /Users/Desktop/example/IM-0020-0001.dcm dcmdir = /Users/Desktop/example Ref Series No = 23 Found 482 files, checking for dicoms Found 480 dicom files in series. First Sorting Computing Slice Direction Vs: 0 0 3 Vs: 0 0 1 Second Sorting Counting frames nframes = 6 nslices = 80 ndcmfiles = 480 PE Dir = ROW (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2.1-- jpegUID: --1.2.840.10008.1.2.4-- Loading pixel data TR=7584.00, TE=11.10, TI=1500.00, flip angle=111.00 i_ras = (-1, 0, 0) j_ras = (0, -1, 0) k_ras = (-0, -0, 1) writing to example.nii.gz... niiWrite(): error opening file example.nii.gz ERROR: failure writing example.nii.gz? I'm wondering how I should interpret this error. I have disk space, and proper permissions. I also have experience using mri_convert with other projects, so generally speaking, I am capable with this script. I would appreciate any suggestions. Thank you. -Robert Wujek? _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
