it works?
>
> doug
>
>
> On 03/26/2013 03:00 PM, Y.V. Jiang wrote:
> > Hi,
> >
> > I was able to view retinotopic mapping results using rtview in version
> > 5. However, the display was on the inflated surface. Is there a way to
> > view the resu
Hi,
I was able to view retinotopic mapping results using rtview in version 5.
However, the display was on the inflated surface. Is there a way to view
the results on the flattened occipital map, similar to version 4's
surf-sess -flat?
Thanks!
-Yuhong
_
raw data are resampled
> into the fsaverage space (unless you use self) and processed there in
> anticipation of doing group analysis.
> doug
>
>
> On 03/26/2013 10:37 AM, Y.V. Jiang wrote:
> > Hi,
> >
> > I wonder if you could help with a basic question for p
Hi,
I wonder if you could help with a basic question for preproc-sess in
Version 5.2.0.
The flag "-surface subject hemi": what should be the entry to "subject?"
The tutorial says fsaverage, but for first-level analysis, should it match
subjectname? Or should it always be fsaverage?
If it needs t
e-pub-v5.2.0
Thanks.
-Yuhong
On Thu, Mar 21, 2013 at 1:12 PM, Douglas N Greve
wrote:
> which version of CentOS? Also, can you send me the result of
> cat $FREESURFER_HOME/build-stamp.**txt
>
>
>
> On 03/21/2013 02:09 PM, Y.V. Jiang wrote:
>
>> Hi Doug,
>>
>>
Hi Doug,
I am using Linux: x86_64 GNU/Linux. Thanks.
-Yuhong
On Thu, Mar 21, 2013 at 12:57 PM, Douglas N Greve wrote:
> what platform are you using?
>
>
> On 03/21/2013 01:24 PM, Y.V. Jiang wrote:
>
>> Hi Doug,
>>
>> Thanks for the reply. From the comma
when you run 3dvolreg.afni from the command line without
> any args?
> doug
>
> On 03/21/2013 12:38 PM, Y.V. Jiang wrote:
> > Hi Doug,
> >
> > I was running preproc-sess in the newly released freesurfer-5.2.0. The
> > command I used was:
> >
> &g
Hi Doug,
I was running preproc-sess in the newly released freesurfer-5.2.0. The
command I used was:
preproc-sess -sf sessid -df sessdir -fsd bold -surface fsaverage lhr
-mni305 -fwhm 6 -per-run
The program failed with the following errors:
3dvolreg.afni -verbose -dfile 004/fmcpr.mcdat -1Dmatrix
Hi Doug,
I ran fcseed-sess in Freesurfer 5.1, all the way through selxavg3-sess. How
can the results be visualized, given that no contrast was specified? In the
freesurfer wiki, it is said that "a contrast does not need to be made
because one is automatically created with an -taskreg". But without
used SPM at all, and
> honestly can't even figure out how to open it.
>
> Katie
>
> On Thu, Feb 3, 2011 at 11:21 PM, Y.V. Jiang wrote:
>
>> Hi Maryam,
>>
>> You should check your spm defaults to see whether it uses radiology or
>> neurology conventio
Hi Maryam,
You should check your spm defaults to see whether it uses radiology or
neurology convention. Most likely your spm has flipped your image, and the
spmregister-sess is trying to match the left hemisphere of your functionals
to the right hemisphere of your anatomical.
-Yuhong
On Thu, Feb
Dear Doug and other Freesurferers,
We are considering using rotating bowtie-shaped stimuli rather than rotating
wedges for retinotopic mapping. The bowties are essentially two symmetriccal
wedges, but unlike horizontal/vertical meridian mapping, they do rotate
around (rather that stay at horizonta
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