Re: [Freesurfer] Question about running kvlQuantifyHippocampalSubfieldSegmentations.sh

2013-06-25 Thread Yang, Zoe
PM To: Yang, Zoe Cc: 'Freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] Question about running kvlQuantifyHippocampalSubfieldSegmentations.sh Dear Zoe, have you checked whether all directories within your subject directory correspond to subjects which have been reconed with the -hippo

[Freesurfer] Question about running kvlQuantifyHippocampalSubfieldSegmentations.sh

2013-06-24 Thread Yang, Zoe
Hi all, I am getting error messages while running kvlQuantifyHippocampalSubfieldSegmentations.sh, similar to the error mentioned in an earlier email (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg24430.html). We did use the -hippo-subfields flag for all of our subjects first,