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Hi FreeSurfer developer,
I want to transform surfaces files (lh.white, lh.pial, rh.white, and
rh.pial) with a registration matrix that has 12 degrees of freedom. Is
there a function in FreeSurfer that can do so?
Very best,
Yixin Ma
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Hi Freesurfer experts,
I'm trying to write the normals of the GM/WM meshes to the entire ribbon.
We usually do it by:
1) Generate normal files from rh.white and lh.white
mris_convert rh.white rh.white.gii
mris_convert -n rh.white
Message-ID: <14b89d9d-130f-08f0-d593-71f2cdef3...@mgh.harvard.edu>
Content-Type: text/plain; charset="utf-8"
you are trying to run a DWI image through recon-all? Sorry, it can only
take T1w right now
On 3/12/2020 3:28 PM, Yixin Ma wrote:
>
> External Email - Use C
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Hi Freesurfer experts,
I'm writing to ask about the hippocampus subfield division again. Last
time, I gave you an example of the subject that I failed to run the
hippocampal subfield division, and you told me that you were able to run
the hippocampus
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Hi Freesurfer experts,
I'm writing to ask how can I reconstruct the DKT40 classifier atlas. Is it
included in recon -all? Thank you for your help.
Best regards,
Yixin Ma
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e. I'm not
sure what kinds of file do you want, so I uploaded the folder of the
FreeSurfer reconstruction results, as attached. Thank you again for your
help.
Best regards,
Yixin
On Fri, Jan 18, 2019 at 12:28 PM Yixin Ma wrote:
> Hi,
>
> The hippocampus subfields division problem happe
regards,
Yixin
-- Forwarded message -
From: Yixin Ma
Date: Fri, Jan 18, 2019 at 11:04 AM
Subject: Hippocampus subfield division error
To:
Hi FreeSurfer experts,
I'm writing to ask about the hippocampus subfields division in FreeSurfer
6.0.
I got an error message as attached
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Hi FreeSurfer experts,
I'm writing to ask about the hippocampus subfields division in FreeSurfer
6.0.
I got an error message as attached, could you please help me with which
part might have gone wrong? This subject's other recon-all worked but not
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Hi Freesurfer experts,
I'm writing to ask if you have any suggestions on generating cortical
layers for hippocampus subfield cortical regions with the help of
freesurfer. When generating cortical layers for other neocortex brain
region, the surface
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Hi Freesurfer experts,
After running the segmentation of hippocampus subfields, I'm wondering if I
can get the surface of the gray matter and white matter of hippocampus in
addition to subfields.
My goal is to divide the hippocampus cortex into
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Hi Freesurfer experts,
I'm writing to ask about coregistration between a thin oblique coronal slab
of DTI image ( only 15 slices) and a cubic 1x1x1 voxel size anatomical
image (volume size is 256x256x256), with additional whole brain
low-resolution
search. But I still don't
quite understand how rx,ry and rz are defined and how negative and positive
angles affect the result. Because sometimes I find the result after the
angle limitation does not align well with my expectation of rotation angle.
Thank you for your help,
Yixin Ma
Brain Image
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