[Freesurfer] Problems with manual grey matter editing

Hello, We have some reconstructions with a significant amount of grey matter excluded in the temporal cortex and are having problems using manual voxel editing to fix this. Our correction process for brain tissue that wasn’t included in the pial/white matter outlines has been as follows: 1. Whe

[Freesurfer] BBRegister Patch

Good morning! Is the bbregister patch available yet (original email below)? Thank you for your time and assistance! Marta Zamroziewicz MD/PhD Candidate Decision Neuroscience Laboratory University of Illinois Urbana-Champaign mzam...@illinois.edu 815-980-3882 Th

[Freesurfer] Checking in about FLAIR Registration Problem

Good morning, I wrote several weeks ago about a bbregister problem that we’ve encountered (I’ve attached the original email below). I’d like to check back in about the status of the patch that was being developed. Thank you for your time and assistance! Marta Zamroziewicz MD/PhD Candidate Deci

Re: [Freesurfer] Checking Back In: FLAIR Registration Problems

nois.edu> 815-980-3882 On Aug 1, 2014, at 9:19 AM, "Zamroziewicz, Marta Karolina" mailto:mzam...@illinois.edu>> wrote: Good morning, I’m just checking back in about a bbregister problem that I posted about earlier this week (see email below). I was told to check back at t

[Freesurfer] Checking Back In: FLAIR Registration Problems

Laboratory University of Illinois Urbana-Champaign mzam...@illinois.edu<mailto:mzam...@illinois.edu> Begin forwarded message: From: "Zamroziewicz, Marta Karolina" mailto:mzam...@illinois.edu>> Subject: [Freesurfer] FLAIR Registration Problems Date: July 29, 2014 at 1:57:58

[Freesurfer] FLAIR Registration Problems

Hello, This email is related to the archived “bbregister and FLAIR” email chain posted by Kayle Sawyer on 5/23/2014 (http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg36117.html). We have also been registering with FLAIR scans, and have run into a problem with approximately half