[Freesurfer] Need some materials

Dear Freesurfer Experts, I am a senior, and I am going to finish my graduation thesis which is about the use of freesurfer.So I need some written materials,such as the development history of Freesurfer, the achievement of Freesurfer and so on. But I don't know. Can you help me? Or give me

[Freesurfer] the intensity VS the bias field

Dear all, I just want to know the difference between the intensity and the bias field.Is not the intensity indicated by the bias field? yours BOBO ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] recon-all error

Dear FreeSurfer experts, I have 20 subjects' data to analysis.And I started 20 terminals to process each subject's data.But they come across error one by one.By now there have been 17 subjects' processes stoped. By the way, I use virtualBOX whose RAM are 4G to process the data.I wander if

[Freesurfer] About GroupAnalysis

Dear All, I am learning GroupAnalysis and I have some problem about the vector that embodies the hypothesis we want to test(such as:0 0 0.5 0.5).I just want to know how each number of the vector involve in the calculating process of mri_glmfit.That is, I want to acquire some materials of how

[Freesurfer] About the GroupAnalysis

Hi All, When we do the GroupAnalysis,there is a vector(such as: 0 0 0.5 0.5).And I just want to know how this vector involve in calculating? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] What is MNI coordinates

Dear FreeSurfer experts Recently,I am learning FreeSurfer and I see a word 'MNI coordinates'.What is MNI coordinates?Can you give me some essays about it? thanks very much BOBO ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] About the sample data

Dear All, I can't uncompress the data long-tutorial.tar.gz with command tar xzvf /mnt/workplace/long-tutorial.tar.gz /mnt/workplace. How can I uncompress the data? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] How to find the anatomical slices in the data?

Dear All, Now I have some datas which are including anatomical data and function data,and I want to find the anatomical slices from them to run command 'recon-all'.How can I do? Yours ___ Freesurfer

[Freesurfer] About recon-all

Dear all I just want to ask a sample question.What's the best number of the parameter of 'recon-all' , -i invol1 -i invol2.That is, how many slices should we use?If the invol1 is the fist slice of the fMRI series or any one of the data? Yours

[Freesurfer] About recon-all

Dear all, I have just ran the command 'recon-all'. recon-all -i 3098704 -s BianYP -sd /home/wb/test/ -all In the parameters,3098704 is a function slice,but this parameter need a anatomical volume.Could it can find the correct ones itself? Whether the anatomical volume is just 3D slice or 2D

[Freesurfer] Help! What does the error mean

Dear All I was just process the commands: recon-all -i /home/wb/test_data/ZWK/34810194 \ -s ZWK \ -sd /home/wb/test/ \ -all And then Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! I just want to know what does the error

[Freesurfer] How to change the work path of freesurfer

Dear Nick Schmansky I am a beginner of freesurfer,and now I'm in trouble. I have install the VirtualBox to run freesurfer,but the disk space is not enough (11.0G).So I need to mount a disk to the system. And now I want to know how to change the working path of freesurfer such as

[Freesurfer] HELP!A problem of Oracle VM VirtualBox

Dear Guys: Now I'm learning Freesurfer and suffering some troubles.I just installed the Oracle VM VirtualBox and virtualitied a virtual computer with freesurfer-Virtualbox-linux-x86-stable-pub-v5.1.0-full. When I started the virtual computer and wanted to mount disk partition (eg: F) to