[Freesurfer] how to generate statistics after segmentation of hippocampal subfields

2014-06-27 Thread kangchengwang0...@gmail.com
Hi experts, After segmentation of hippocampal subfields, how to generate statistics of the subfield regions, such as volume? Thank you Wang Kangcheng Faculty of Psychology, Southwest University, China Email: kangchengwang0...@gmail.com / wangkangcheng@163.com Address: No.2

[Freesurfer] meaning of foldind

2014-06-25 Thread kangchengwang0...@gmail.com
Dear experts, In the Group stats files, there is a file of lh.a2009s.foldind (or rh.a2009s.foldind). What's the meaning of foldind? Thank you Wang Kangcheng ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] Problem of VolumeRoiCorticalThickness

2014-06-16 Thread kangchengwang0...@gmail.com
Dear Bruce, Now, I change the standard atlas to avg152T1.nii.gz which was included in the FSL and make a mask of superior frontal gyrus (Harvard-Oxford Cortical Structural Atlas). I can map the ROI-mask to the fsaverage surface to create an fsaverage-ROI surface overlay. But when I map one

Re: [Freesurfer] Problem of VolumeRoiCorticalThickness

2014-06-16 Thread kangchengwang0...@gmail.com
into --noreshape. If I use opition of reshapre, it always report the errors of dimension. Thank you Wang Kangcheng From: Bruce Fischl Date: 2014-06-16 21:04 To: kangchengwang0...@gmail.com CC: freesurfer Subject: Re: [Freesurfer] Problem of VolumeRoiCorticalThickness Hi Wang you can't change

Re: [Freesurfer] Problem of VolumeRoiCorticalThickness

2014-06-16 Thread kangchengwang0...@gmail.com
Dear Douglas Greve, Thank you very much. I change it and change the option of reshape into noreshape. Then, it could be sucessful. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu

[Freesurfer] How to extract significant result for each subject

2014-06-12 Thread kangchengwang0...@gmail.com
Dear freesurfers, I contrast depression and control and find that patients have a lower thickness in region of inferior frontal gyrus. Now, I want to extract the data of thickness for each subject. Could you tell which command could do this? Thank you Wang Kangcheng ( New learner of

[Freesurfer] 回复: Re: LGI error

2013-12-07 Thread kangchengwang0...@gmail.com
Hi Marie Schaer, Thank you very much. I hope other experts could help me. Kangcheng Wang Kangcheng Faculty of Psychology, Southwest University, China Email: kangchengwang0...@gmail.com / wangkangcheng@163.com Address: No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China