[Freesurfer] DT_recon error

External Email - Use CautionHi all,   I try to run dt_recon on my dicom files, acquired with a siemens scanner unsing the command from the wiki. The dwi.nii.gz and the dwi-ec.nii.gz as well as the bval and bvec files are generated without problems. Then following error massage is

[Freesurfer] Co-Registration after recon-all

External Email - Use CautionHi,   I ran recon-all on a MPRAGE-file, which was registered in freesurfer-space. Now I want to register other sequences like T2 in the same space using the registration matrix. What is the best way to do this? In bbregister I didn't found an option to

Re: [Freesurfer] Using Mri_vol2surf

External Email - Use CautionWell, it gives out an error that the file given for srcreg is unkown or cannot be found. So mainly I think the problem is that I defined the "wrong" file there.   I run bbregister with the following command:   bbregister --s subid --mov mcT2_MAP.nii.

[Freesurfer] Using Mri_vol2surf

External Email - Use CautionDear List,   I first run the recon-all stream using a MPRAGE as input, then bbregister to move other mri-sequences to this MPRAGE. Now I want to transfer the values from these mri-sequences to the surface, so that I can calculate on the surface and perf

[Freesurfer] SUBJECT_DIR using bbregister

External Email - Use CautionDear List,   when I try to use bbregister it gives out an ERROR saying it can't find the subject.   I use freesurfer on a server where it is installed for everybody to use, but i'm not allowed to write in the subject_dir in this home-directory (e.g. "