Dear All,
I have a MRI dataset without skull (did skull-stripping with FSL),
and try to reconstruct the surface. I run:
recon-all -s $subject_name -autorecon-all
But the program stops because "nu_correct: Command not found"!
Question:
1> whether installation was not correct so not to find "n
/fswiki/ReconAllDevTable
Nick
On Mon, 2007-01-22 at 11:02 -0800, yanxia wrote:
> Dear All,
>
> I have a MRI dataset without skull (did skull-stripping with FSL),
> and try to reconstruct the surface. I run:
>
> recon-all -s $subject_name -autorecon-all
>
> But the pro
Dear All,
I am a new user of FreeSurfer. I have two questions:
1> How can I use mri_surf2vol or others to convert .pial to .mgz?
2> I have a binary .mgz file. How can I generate .pial file so that I
can view it with tksurfer?
Thanks.
Yan
___
F
the segmentation is for doing this. The utility
mri_tessellate will generate a surface from a binary segmentation
but it won't be smooth or topologically correct.
cheers,
Bruce
On Mon, 29 Jan 2007, yanxia wrote:
Dear All,
I am a new user of FreeSurfer. I have two questions:
1> How c
t 10:17 AM 1/30/2007, Bruce Fischl wrote:
1. Yes.
2. No, it's all done in what we call "conformed" space, which is the
original volume interpolated to 256^3, 1mm iso and 8 bits/voxel
On Tue, 30 Jan 2007, yanxia wrote:
Thanks, Bruce.
I have another questions:
1> If the input bin
Dear All,
I am a new user of FreeSurfer. I have two questions:
1> Is there a way to convert FreeSurfer surface files to Analyze
format? I use 'tkmedit bert brain.mgz lh.pial' to view the image with
the surface bounday, and hope that I can save the image and the
surface boundary with Analyze f
