[Freesurfer] data quality check before analysis

Yunus. ----Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences soleymani.yu...@yahoo.com+98 914 526

Re: [Freesurfer] data quality check before analysis [EXTERNAL]

. Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences soleymani.yu...@yahoo.com+98 914 526 9298 On Saturday, October 14, 2023 at 03:29:11 PM GMT+3:30

Re: [Freesurfer] Freeview issue

External Email - Use Caution I have the same problem. I would greatly appreciate your help with this. Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences soleymani.yu

Re: [Freesurfer] Freeview issue

so, the software analyzes the subjects correctly by using parallel recon-all code. The only issue is that the Freeview interface doesn't work and the error mentioned above appears. Is it because of that I am using a remote desktop connection tool to connect to my institute servers? ---

[Freesurfer] Unsubscribe Mailing List

External Email - Use Caution Hi Freesurfer Team Please unsubscribe my email from the list Email: soleymani.yunus@yahoo.comThanksYunus Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University

[Freesurfer] Hippocampal subfields segmentation

External Email - Use Caution Hello Freesurfer users, I was wondering if there is any Freesurfer code available for performing hippocampal subfield segmentation on multiple subjects simultaneously in parallel. I already have the code for analyzing a single subject, but I'm intere

[Freesurfer] freesurfer results QC

External Email - Use Caution Hi Freesurfer users, I have recently used the FSQC algorithm (https://secure-web.cisco.com/1EzTQr-pZpN3NDVSECe0dGNYNhra0JW3OGYIpwSTpVNT4vxODxghAli6kPP9TwN8sZnTisGBBFM1GrOQ02XnTu3sRnNyMTuE-yEqScIQFgCHQFAUmdiJucGAl_RdzKVclgzJ-4S1o3hyVPj_0L2cfG_mwtsfyWmy4

[Freesurfer] total intracranial volume

External Email - Use Caution Hi Freesurfers, I wanted to know if the Freesurfer volume results are already normalized by the total intracranial volume or if I should normalize it for each subject myself. Thanks for your answer,Yunus

Re: [Freesurfer] freesurfer results QC

). These images would then require closer inspection. Best, Kersten On Sun, 2023-11-19 at 07:47 +, yunus soleymani wrote: CAUTION: This email originated from outside of DZNE. Do not click links or open attachments unless you recognize the sender and know the content is safe. ACHTUNG: Dies ist

[Freesurfer] fsaverage folder

s for each individual subject. I am curious to know what this folder is and how it could be useful. Thank you for taking the time to answer my question. Best regards,Yunus --------Yunus Soleymani Ph.D. Candidate of Neuroimag

Re: [Freesurfer] fsaverage folder

External Email - Use Caution thanks alot Yujing for your answer.I changed the SUBJECTS_DIR to my external hard drive before began the analysis by the code: SUBJECTS_DIR='pwd' --------Yunus Sole

Re: [Freesurfer] skull stripping error

:30, Glasser, Matt wrote: External Email - Use Caution Why are you rerunning FreeSurfer on HCP data?  You are unlikely to match the quality of the original FreeSurfer runs. Matt.   From: on behalf of yunus soleymani Reply-To: Freesurfer Support List Date

Re: [Freesurfer] skull stripping error

download and use preprocessed packages of HCP fMRI data? We would greatly appreciate it if you could answer this question. It would be very helpful for us. best,Yunus Yunus Soleymani Ph.D. Candidate of Neuroimaging

[Freesurfer] freesurfer output stats

External Email - Use Caution hi freesurfers,I wanted to know what is the difference between '.aparc.a2009s.stats', '.aparc.DKTatlas.stats', '.aparc.pial.stats', and '.aparc.stats' in the stats directory of freesurfer results?thanks,Yunus ___

Re: [Freesurfer] mri_error_no_clear_message

it works for you as well.bests,Yunus Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences soleymani.yu...@yahoo.com+98 914 526 9298

[Freesurfer] brain volumes normalization

reference values in the Freesurfer outputs to which surface areas can be normalized? Thank you in advance for your help. Best regards,Yunus --------Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medica

[Freesurfer] brain volumes normalization

? Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences soleymani.yu...@yahoo.com+98 914 526 9298 ___ Freesurfer mailing list Freesurfer

[Freesurfer] surface and cortical thickness normalization

each subject? I would greatly appreciate your response. Thank you, Yunus Yunus Soleymani Ph.D. Candidate of Neuroimaging Tehran University of Medical Sciences soleymani.yu...@yahoo.com+98 914 526 9298

[Freesurfer] freesurfer launching error

External Email - Use Caution hi everyone, recently after a major Windows 11 update, I can not launch Freeview in my WSL Ubuntu machine despite having VcXsrv working in the background,  and encountered the following error:  QXcbConnection: Could not connect to display 10.255.255.2