[Freesurfer] thalamic nuclei additional scan error

2018-11-23 Thread zhac looch
External Email - Use Caution Hi Freesurfer Team, I want to add additional scan my thalamic segmentation. but my code is not working. where is the error in my code? thanks for help my code: segmentThalamicNuclei.sh MS14 /Applications/freesurfer/subjects/MS14/mri/orig/T2raw.mgz

[Freesurfer] Thalamic Nuclei Parcellation Label Files Problem

2018-10-25 Thread zhac looch
External Email - Use Caution Hello Freesurfer team, I just run code 'Recon-all -all' on my analyzed data. Then, I run the code down below; segmentThalamicNuclei.sh bert [SUBJECTS_DIR] That gave me 3 files named; 'ThalamicNuclei.v10.T1.FSvoxelSpace' 'ThalamicNuclei.v10.T1' and

[Freesurfer] freeview error

2018-10-24 Thread zhac looch
External Email - Use Caution Hello freesurfer team, How can ı fix the problem? Ubuntu-brain:~$ freeview Could not set locale No such file or directory This application failed to start because it could not find or load the Qt platform plugin "xcb" in "". Reinstalling the