Re: [Freesurfer] "-atlas" argument and help with multiple errors running recon-all

2023-09-10 Thread Douglas N. Greve
External Email - Use Caution It looks  like there is a huge defect which you will  probably have to fix by hand if you want to use this case. See https://secure-web.cisco.com/1AMkvq3aFvAxz7-H1y5F071f2fyGqYpXaIOw7V46NLOVrr8agLP0RsNfxinekhl4cL34_t-ZzSoffLkqFmj8F-0OUuxklCU9ixROLbS5JU

Re: [Freesurfer] "-atlas" argument and help with multiple errors running recon-all

2023-09-13 Thread Rona Haker
External Email - Use Caution Thanks, I have already read this and tried to perform the instructions, but the files brainmask and the files under directory 'surf' have not yet been created so I cannot do it. Any other solutions? On Sun, Sep 10, 2023 at 8:47 PM Douglas N. Greve wr

Re: [Freesurfer] "-atlas" argument and help with multiple errors running recon-all

2023-09-13 Thread Rona Haker
External Email - Use Caution and also, where can I find the documentation for the argument -atlas that the log proposed I should use? Couldn't find it anywhere... On Wed, Sep 13, 2023 at 5:05 PM Rona Haker wrote: > Thanks, I have already read this and tried to perform the instru