Re: [Freesurfer] [FreeSurfer] Process terminated when talairach was running

2023-05-15 Thread Douglas N. Greve
*From:* freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve *Sent:* 12 May 2023 21:37:21 *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] [FreeSurfer] Process terminated when talairach was running External Email - Use

Re: [Freesurfer] [FreeSurfer] Process terminated when talairach was running

2023-05-14 Thread Krystal Xiwing Yau
] [FreeSurfer] Process terminated when talairach was running External Email - Use Caution That's weird. In the echo below, is that from your shell or on the HCP? When you source the FS environment, that variable will be set. On 5/12/2023 5:33 AM, Krystal Xiwing Yau wrote

Re: [Freesurfer] [FreeSurfer] Process terminated when talairach was running

2023-05-12 Thread Douglas N. Greve
External Email - Use Caution That's weird. In the echo below, is that from your shell or on the HCP? When you source the FS environment, that variable will be set. On 5/12/2023 5:33 AM, Krystal Xiwing Yau wrote: External Email - Use Caution Dear FreeSurfer expoerts,

[Freesurfer] [FreeSurfer] Process terminated when talairach was running

2023-05-12 Thread Krystal Xiwing Yau
External Email - Use Caution Dear FreeSurfer expoerts, I am running recon-all for the subject on a HPC. It exited with error when talairach was running - it indicated "MINC_BIN_DIR: Undefined variable". The log file is attached to this email. I tried to look up the