[Freesurfer] [FreeSurfer] ValueError axes don't match array

2023-08-29 Thread Cerri, Stefano,PHD
External Email - Use Caution Hi Krystal, Can you send your samseg command and the output of mri_info on both the T1 and coregistered FLAIR images? It seems that the two images have different image sizes. Stefano Subject:[Freesurfer] [FreeSurfer] ValueError axes don&#

[Freesurfer] [FreeSurfer] ValueError axes don't match array

2023-08-21 Thread Krystal Xiwing Yau
External Email - Use Caution Dear FreeSurfer experts, I have completed the processes of coregistration of FLAIR to T1 image for the subject. As I ran samseg with lesion contrast, the following error message occurred: writing template transform to /home/admin1/freesurfer/subj