in freeview, runsomethiing like
freeview -f rh.white:patch=rh.full.flat.patch.3d
The rh.white is just there to give freeview a full surfce to load. You
will only see your patch
On 4/14/2022 4:30 AM, Morgenroth Elenor wrote:
External Email - Use Caution
Dear Freesurfer Experts,
I have been using
*MailScanner has detected a possible fraud attempt from
"secure-web.cisco.com" claiming to be*
https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferOccipitalFlattenedPatch
<https://secure-web.cisco.com/1LCTowYlrDekgf_ZV9MiK3GGkTFCmyhf35--SPPkPv8MWus8oxWZCwMUkcMMNQQHgN2kSR3L7nXxhRK5VLcs8P4F8lvBeOLhowkl29r3eWaVwMWj7puZ0_XSevIz1vOyMuv1h9MardKpoDUOz7XlU7hy5c5rG02Y5abWEGeOS3lEFwUYxT5vNoYnMLo97L1j_y-ncUXVcQ37iXpkAk2T1JkJq_hSmShJyhc7JNbxtGgn4YhJyaJrB6S3Dqb5TQQkAKM0EqRcj4JKKPczdL_fRNqQUm4UZ57rR-qfu4QOjT9BcYqWtd-2fOt3UaKgnH_iiQhqitelsqFisG9FD5YyMnw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFreeSurferOccipitalFlattenedPatch>
to create flatmaps of individual subjects. This ran without any errors and I
have a 'rh.full.flat.patch.3d’ file now.
I can’t figure out how to visualise it to check it (in freeview).
I have also tried to use pycortex to visualise this as I’m eventually aiming to
plot data onto my flatmap, but that isn’t working either (I get a different
error (ExpatError) using my flatmap as I get with the example flatmap, but I
also can’t visualise the example flatmap in freeview).
Thank you for your help!
Ellie
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