Do you acquire any other scans, like an mprage, in the same session? If so, the
easiest thing to do would be to push that through our recon-all pipeline, then
register your MPF images to either the mprage or to surfaces using bbregister
and you can transfer whatever parcellations/segmentations you like
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of ERNEST KISSI
Sent: Tuesday, January 9, 2024 2:06 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] [WARNING: ATTACHMENT UNSCANNED]FreeSurfer Error
External Email - Use Caution
Dear Freesurfer Developers,
I am a graduate student working on Macromolecular Proton Fraction (MPF) and I
need to generate parcellation for it using Freesurfer. I have read several
articles that reported successful results with this method. However, I have
encountered some errors when I tried to run Freesurfer on my data. Some of the
errors are related to transformation at the talairach, and some are related to
missing brain mask. I have been struggling with these issues for four days and
I have not been able to process any of my data. I have an urgent deadline for
my thesis presentation on Friday and I would appreciate your assistance.
I have subscribed to the mailing list but I have not received a confirmation
email yet. I have attached a screenshot of my registration and two examples of
my T1 MPF images. Could you please test them on your end and let me know what
the problem is and how to fix it?
Thank you for your time and support.
Sincerely,
_______________________________________________
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Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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