Thanks so much! Docker had 2 GB of ram, now it has 10...we'll see if that
makes it happy.
-Dianne
On Sun, Feb 4, 2018 at 10:52 AM, Chris Gorgolewski <
krzysztof.gorgolew...@gmail.com> wrote:
> This looks like a memory issue to me as indicated bu those two lines:
>
> /opt/freesurfer/bin/reconbatc
This looks like a memory issue to me as indicated bu those two lines:
/opt/freesurfer/bin/reconbatchjobs: line 81: 4014 Killed
exec $JOB >> $LOG 2>&1
/opt/freesurfer/bin/reconbatchjobs: line 81: 4017 Killed
exec $JOB >> $LOG 2>&1
You can adjust how much memory of your host machine will be acces
This is not expected.
You would need to provide more details (recon-all.log) for anyone to be
able to help you. It might be also worth googling the specific error
message before hand - it could be that someone else run into this before.
Best,
Chris
On Sat, Feb 3, 2018 at 7:55 PM, Dianne Patterso
Since I'm following the example on the github page, using the ds005
dataset, now with the correct license binding, I am surprised to see
freesurfer exiting with errors (but I don't know much about freesurfer):
I run this:
docker run -ti --rm -v
/Volumes/Main/Working/BIDS_TESTING/license.txt:/lice
Wonderful...and makes total sense! Thankyou...it is off and running now.
-Dianne
On Mon, Jan 22, 2018 at 8:19 PM, Chris Gorgolewski <
krzysztof.gorgolew...@gmail.com> wrote:
> Hi Dianne,
>
> You need to "mount" the using -v the same way input and output directories
> are mounted. For example:
>
Hi Dianne,
You need to "mount" the using -v the same way input and output directories
are mounted. For example:
docker run -ti --rm -v /Volumes/Main/Working/BIDS_
TESTING/license.txt:/license.txt:ro -v
/Volumes/Main/Working/BIDS_TESTING/ds005:/bids_dataset:ro
-v /Volumes/Main/Working/BIDS_TESTING
