Re: [Freesurfer] -per-run analysis in native space

2015-04-01 Thread Douglas N Greve
I can't tell from that message. Can you copy mask.nii.gz and rho1mn.nii.gz somewhere I can access? On 04/01/2015 12:14 PM, SHAHIN NASR wrote: Hi Doug, Selxavg3-sess started without any problem but then I faced the below error. Do you know what is the problem? Global In-Mask Mean =

Re: [Freesurfer] -per-run analysis in native space

2015-04-01 Thread SHAHIN NASR
Hi Doug, Selxavg3-sess started without any problem but then I faced the below error. Do you know what is the problem? Global In-Mask Mean = 1316.7 (8.68411) Rescale Target = 100 RescaleFactor = 0.0759477 OLS Residual Pass run 1t= 0.0 Saving rho1 run 2t=144.1 Saving rho1 run 3

Re: [Freesurfer] -per-run analysis in native space

2015-03-27 Thread Douglas N Greve
Yes. Note that that will produce huge files (float images 256^3 by number of time points). doug On 03/27/2015 01:50 PM, SHAHIN NASR wrote: Hi Surfers, I want to find a way to analyze subcortical activities in native space and still take advantage of per-run registration. As far as I