Hi list,
I am trying to visualize a .nii ROI coming from MEG, which is in Colin27
space.
I can visualize it perfectly in mricron and tkmedit with the following
command:
tkmedit -f path/to/spm8/canonical/single_subj_T1.nii -overlay MEG_ROI.nii
-fthresh 0.5
(single_subj_T1.nii is Colin27)
but when
Try registering path/to/spm8/canonical/single_subj_T1.nii to Colin with
bbregister
doug
On 12/13/2013 11:09 AM, Garikoitz Lerma-Usabiaga wrote:
> Hi list,
> I am trying to visualize a .nii ROI coming from MEG, which is in
> Colin27 space.
>
> I can visualize it perfectly in mricron and tkmedit
Hi Doug,
this is what I did. This system worked in other occasions. Could it be the
problem how the volume MEG_ROI.nii was created? My colleague had a Matlab
matrix of 256x256x256 and he converted it to a .nii file.
The registration matrix between single_subj_T1.nii and Colin27 is the
following on
Hi Doug,
this is what I did. This system worked in other occasions. Could it be the
problem how the volume MEG_ROI.nii was created? My colleague had a Matlab
matrix of 256x256x256 and he converted it to a .nii file.
The registration matrix between single_subj_T1.nii and Colin27 is the
following on
Run
tkregister2 --mov MEG_ROI.nii --targ
path/to/spm8/canonical/single_subj_T1.nii --regheader --reg reg1.dat
mri_matrix_multiply -im reg1.dat -im Mikel_SingleSubject_to_Colin.dat
-om final.reg.dat
Then use final.reg.dat
doug
On 12/13/2013 11:56 AM, Garikoitz Lerma-Usabiaga wrote:
> Hi Doug,
Thanks Doug, now it is working perfectly!
On Fri, Dec 13, 2013 at 6:05 PM, Douglas N Greve
wrote:
>
> Run
> tkregister2 --mov MEG_ROI.nii --targ path/to/spm8/canonical/single_subj_T1.nii
> --regheader --reg reg1.dat
> mri_matrix_multiply -im reg1.dat -im Mikel_SingleSubject_to_Colin.dat -om
> fi
