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Hi all,
I ran a 2yo subject through FS6.0 using 'recon-all -i /firstdicom.dcm -all' and
the output segmentations and surfaces looks good.
Can someone explain why I see different alignments when I view the 001.mgz and
brainmask.mgz files in freeview,
Hi,
When you load brainmask.mgz as the second volume, it will be realigned
to 001.mgz. The default resample method is nearest-neighbor. Thus you
get the blocky look. You can try loading it with trilinear or cubic
resampling like this from the command-line:
freeview -v 001.mgz brainmask.mgz -
-boun...@nmr.mgh.harvard.edu
On Behalf Of Ruopeng Wang
Sent: Monday, September 16, 2019 11:51 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] 001 vs brainmask views in freeview
Hi,
When you load brainmask.mgz as the second volume, it will be realigned to
001.mgz. The default resample meth
*On Behalf Of *Ruopeng Wang
*Sent:* Monday, September 16, 2019 11:51 AM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] 001 vs brainmask views in freeview
Hi,
When you load brainmask.mgz as the second volume, it will be realigned
to 001.mgz. The default resample method is nearest-nei
un...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
On Behalf Of Ruopeng Wang
Sent: Monday, September 16, 2019 11:51 AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Fre
...@nmr.mgh.harvard.edu
*On Behalf Of *Ruopeng Wang
*Sent:* Monday, September 16, 2019 1:17 PM
*To:* freesurfer@nmr.mgh.harvard.edu
*Subject:* Re: [Freesurfer] 001 vs brainmask views in freeview
The first volume is always displayed in its original orientation where
pixel data are stored. So