Hi Maedeh
there are a bunch of steps involved in the topology correction that you
will need to run (e.g. surface inflation, quasi-homeomorphic spherical
mapping, etc...). If you can synthesize a T1-ish image you can just run it
through recon-all and it should do the right thing. Otherwise you
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Dear Bruce,
The other day I asked you about doing topology correction on my own
segmentation(I have put my first e-mail and you response in the following so
u can track easier). according to what you suggested, I have created a
synthetic T1 volume b
It does not sound like something we can do, though I don't entirely follow
everything that you wrote
On 7/10/2019 11:07 PM, Maedeh Khalilian wrote:
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Dear FreeSurfer experts,
I know that FreeSurfer does segmentation, surface reconstruction and topology
corre
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Dear FreeSurfer experts,
I know that FreeSurfer does segmentation, surface reconstruction and
topology correction through its routine pipeline using "recon-all" .
However, I have some T2w brain MR images and I have done the segmentation
and extracte
