Hi,
I have generated inner and pial surfaces using another method. However, I
am interested in computing the cortical thickness using the method
implemented in Freesurfer. My surfaces are in vtk format. I was wondering
how I can do this, if this is at all possible.
Thanks,
--
Navid Shiee
__
Hi Navid,
I think mris_convert will take a .vtk file as input. Try it and see if it
works:
mris_convert lh.pial.vtk lh.pial
mris_convert lh.white.vtk lh.white
you can then use mris_thickness to calculate the thickness measures.
cheers
Bruce
On Tue, 22 May 2012, Navid Shiee wrote:
> Hi,
>
Hi,
Thanks for your suggestion. When I tired to use mris_convert I got a bunch
of "freadFloat: fread failed" errors. To make sure there is not an
incompatibility from my vtk files, I used mris_convert to convert
Freesurfer surfaces to vtk and then convert them back to .pial, but I still
got the sa
Hi Navid,
why don't you email me one and I'll see if I can figure it out
Bruce
On Wed, 23
May 2012, Navid Shiee wrote:
> Hi,
>
> Thanks for your suggestion. When I tired to use mris_convert I got a bunch of
> "freadFloat: fread failed" errors. To make sure there
> is not an incompatibility fro
