Re: [Freesurfer] Accounting for lesions misclassified as non-brain matter

2015-04-01 Thread jennifer.fer...@alumni.ubc.ca
of jennifer.fer...@alumni.ubc.ca [jennifer.fer...@alumni.ubc.ca] Sent: Tuesday, March 31, 2015 11:30 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Accounting for lesions misclassified as non-brain matter From: jennifer.fer...@alumni.ubc.ca Sent

Re: [Freesurfer] Accounting for lesions misclassified as non-brain matter

2015-03-31 Thread Bruce Fischl
Hi Jenn have you tried filling the lesions on the aseg.mgz before creating the surfaces? Bruce On Tue, 31 Mar 2015, jennifer.fer...@alumni.ubc.ca wrote: > > > From: jennifer.fer...@alumni.ubc.ca > Sent: Tuesday, March

Re: [Freesurfer] Accounting for lesions misclassified as non-brain matter

2015-03-31 Thread jennifer.fer...@alumni.ubc.ca
From: jennifer.fer...@alumni.ubc.ca Sent: Tuesday, March 31, 2015 11:04 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Accounting for lesions misclassified as non-brain matter Hi there, I am having an issue with stroke lesions that border onto the cortex being mi