I see it in the help:
-b
tabular output
On 2/24/2022 12:23 PM, Jacoby, John wrote:
Hi Doug, thanks for the pointer. That was exactly what I was looking for.
When I copied the command from recon-all.log, it used a -b flag. I
can't find documentation for this flag
Hi Doug, thanks for the pointer. That was exactly what I was looking for.
When I copied the command from recon-all.log, it used a -b flag. I can't find
documentation for this flag either in the --help or on the wiki. Could you
elaborate on what it does? Thank you!
Best,
John
You don't need to go that far. You can run mris_annotoical_stats. Look
in recon-all.log to find the command line used to create the
?h.aparc.annot and just change the annot and output file
On 2/22/2022 10:02 AM, Jacoby, John wrote:
Hi all,
We were sent a FreeSurfer annotation file that
Hi all,
We were sent a FreeSurfer annotation file that denotes some ROIs we're
interested in. What's the proper way to map this annotation to the cortical
ribbon volume and get an estimate of that volume for each ROI? I've already
registered the annotations to the subject from fsaverage space
