Re: [Freesurfer] Any updates on recon-all GPU support?

[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar [freesurfer@gmail.com] Sent: Sunday, July 03, 2016 3:06 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? On 2 July 2016 at 19:06, Derek Pisner <dpis...@psychiatry.arizona.edu> wrote: &g

Re: [Freesurfer] Any updates on recon-all GPU support?

On 2 July 2016 at 19:06, Derek Pisner wrote: > Thanks anyway for taking a look. Despite a number of further tweaks to our > cuda libraries, we have made no further progress with this. Any chance you > could pass along your cuda binaries so that I can see

Re: [Freesurfer] Any updates on recon-all GPU support?

s. -Derek From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar [freesurfer@gmail.com] Sent: Friday, July 01, 2016 5:47 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? On 1

Re: [Freesurfer] Any updates on recon-all GPU support?

On 1 July 2016 at 17:48, Derek Pisner wrote: > Here is the output attachment. Hmmm this is the actual error: == gcc -DHAVE_CONFIG_H -I. -I.. -I../include -I../include/dicom -I../xml2 -I../include/NrrdIO -DTEEM_DIO=0 -DTEEM_32BIT=0 -DTEEM_QNANHIBIT=1

Re: [Freesurfer] Any updates on recon-all GPU support?

-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar [freesurfer@gmail.com] Sent: Thursday, June 30, 2016 5:46 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? On 27 June 2016 at 01:27, Derek Pisner <d

Re: [Freesurfer] Any updates on recon-all GPU support?

On 1 July 2016 at 04:30, Dr. M. Shahid wrote: > I have one question here. If the code compiles using sdk 7.5 or latest, will > the resulting binary be FS v6? I wonder if the mri_ca_register_cuda code is > also changed in v6 tree...and if mixing of binaries from

Re: [Freesurfer] Any updates on recon-all GPU support?

Hi, I have one question here. If the code compiles using sdk 7.5 or latest, will the resulting binary be FS v6? I wonder if the mri_ca_register_cuda code is also changed in v6 tree...and if mixing of binaries from different FS versions would not affect the results that much... Best regards, --

Re: [Freesurfer] Any updates on recon-all GPU support?

On 27 June 2016 at 01:27, Derek Pisner wrote: > Was not able to resolve this quite yet. I figured out that I had to backtrack > a bit because I was having trouble getting the complete set of data files > from the Fs ftp server using "git annex ." And now it

Re: [Freesurfer] Any updates on recon-all GPU support?

y, June 26, 2016 1:51 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? On 24 June 2016 at 05:34, R Edgar <freesurfer@gmail.com> wrote: > On 23 June 2016 at 22:44, Derek Pisner <dpis...@psychiatry.arizona.edu> wrote: > >&

Re: [Freesurfer] Any updates on recon-all GPU support?

On 24 June 2016 at 05:34, R Edgar wrote: > On 23 June 2016 at 22:44, Derek Pisner wrote: > >> Fixed the gcc problems as well (this required a tweak to host_config.h in >> /usr/local/cuda/include). Now, I've hit another roadblock: >> >>

Re: [Freesurfer] Any updates on recon-all GPU support?

On 23 June 2016 at 22:44, Derek Pisner wrote: > Fixed the gcc problems as well (this required a tweak to host_config.h in > /usr/local/cuda/include). Now, I've hit another roadblock: > > Makefile:4542: recipe for target 'libutils_cuda_a-mrisurf.o' failed >

Re: [Freesurfer] Any updates on recon-all GPU support?

: Thursday, June 23, 2016 5:23 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? On 23 June 2016 at 16:26, Derek Pisner <dpis...@psychiatry.arizona.edu> wrote: > Hi Richard, > > Hope this finds you well. I followed your instructions an

Re: [Freesurfer] Any updates on recon-all GPU support?

On 23 June 2016 at 16:26, Derek Pisner wrote: > Hi Richard, > > Hope this finds you well. I followed your instructions and compiled from > source (you were right-- compiling Fs from source isn't too bad at all!) I > also made your tweak to configure.in and then

Re: [Freesurfer] Any updates on recon-all GPU support?

From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Derek Pisner [dpis...@psychiatry.arizona.edu] Sent: Thursday, June 23, 2016 1:26 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? Hi Richard, Hope

Re: [Freesurfer] Any updates on recon-all GPU support?

nce, Derek From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar [freesurfer@gmail.com] Sent: Wednesday, June 22, 2016 6:14 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on rec

Re: [Freesurfer] Any updates on recon-all GPU support?

-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of R Edgar [freesurfer@gmail.com] Sent: Wednesday, June 22, 2016 6:14 PM To: Freesurfer support list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? On 22 June 2016 at 19:32, Derek Pisner <d

Re: [Freesurfer] Any updates on recon-all GPU support?

On 22 June 2016 at 19:32, Derek Pisner wrote: > Thanks for the very quick reply. Good to know that someone has successfully > compiled GPU binaries for newer CUDA versions. I took a quick look at the > developer's guide for building the cuda binaries from

Re: [Freesurfer] Any updates on recon-all GPU support?

pport list Subject: Re: [Freesurfer] Any updates on recon-all GPU support? On 22 June 2016 at 18:17, Derek Pisner <dpis...@psychiatry.arizona.edu> wrote: > Anyone manage to successfully configure recon-all to run with -use-gpu for > recent cuda toolkit versions? I realize cuda support ha

Re: [Freesurfer] Any updates on recon-all GPU support?

On 22 June 2016 at 18:17, Derek Pisner wrote: > Anyone manage to successfully configure recon-all to run with -use-gpu for > recent cuda toolkit versions? I realize cuda support has ceased over the past > few years for Freesurfer, but have there been any

[Freesurfer] Any updates on recon-all GPU support?

Anyone manage to successfully configure recon-all to run with -use-gpu for recent cuda toolkit versions? I realize cuda support has ceased over the past few years for Freesurfer, but have there been any successful builds for CUDA toolkit versions 6 and up? I am currently looking to configure