*Od:* freesurfer-boun...@nmr.mgh.harvard.edu
za uživatele Adam Rytina
*Odesláno:* sobota 15. února 2020 19:52
*Komu:* Freesurfer support list
*Předmět:* Re: [Freesurfer] Apply transformation
External Email
transformation
Hello,
please, could you help me with this case? What am I doing wrong?
Thanks a lot
Od: freesurfer-boun...@nmr.mgh.harvard.edu
za uživatele Adam Rytina
Odesláno: sobota 15. února 2020 19:52
Komu: Freesurfer support list
Předmět: Re: [Freesurfer] Apply
support list
Předmět: Re: [Freesurfer] Apply transformation
External Email - Use Caution
Thanks, unfortunately, I am making some mistake but I don´t know where.
First of all I run autorecon1 on my anatomical T1 data (the orig.mgz image is
saved in /usr/local/freesurfer/subjects/anatomical
:15
Komu: freesurfer@nmr.mgh.harvard.edu
Předmět: Re: [Freesurfer] Apply transformation
Yes, mri_vol2vol
On 2/15/20 11:07 AM, Adam Rytina wrote:
External Email - Use Caution
Hello all,
I want to apply the saved transformation (a transformation matrix 4x4 acquired
by registration of an anatom
Yes, mri_vol2vol
On 2/15/20 11:07 AM, Adam Rytina wrote:
External Email - Use Caution
Hello all,
I want to apply the saved transformation (a transformation matrix 4x4
acquired by registration of an anatomical and a diffusion image) on my
input anatomical mask and change a final FOV
External Email - Use Caution
Hello all,
I want to apply the saved transformation (a transformation matrix 4x4 acquired
by registration of an anatomical and a diffusion image) on my input anatomical
mask and change a final FOV by specifying a diffusion reference image (its
voxel
glad to hear it worked! You can control the conversion to int by using
-odt, --out_data_type
cheers
Bruce
On Sun, 22 Oct 2017, Gidon Levakov wrote:
> Hi,
>
> I think I got the problem, just updating, so other people won't do the same
> mistake:
>
> The warp stored in the 'talairach
Hi,
I think I got the problem, just updating, so other people won't do the same
mistake:
The warp stored in the 'talairach.m3z' file should be applied on a *conformed
volume*, meaning the raw image after the the following command was cried
out:
"mri_convert img.nii.gz img_conformed.nii.gz --confo
Hi Freesurfer experts,
I have several nifti images (created with another software) in the subjects
original anatomical space (native space) that I want to transform to a
common space (freesurfer version of MNI305 should be fine) using non-linear
transformation.
Reading a previous answer regarding
