Re: [Freesurfer] Bad segmentation in gadolinium MRI

2019-05-29 Thread Bruce Fischl
you can try the graph cuts skull strip to see if it removes more, or play with the watershed parameters cheers Bruce On Wed, 29 May 2019, María Martínez Rodrigo wrote: External Email - Use Caution Thanks for your answer. For the most of the patients I just have T1 images. Is

Re: [Freesurfer] Bad segmentation in gadolinium MRI

2019-05-29 Thread María Martínez Rodrigo
External Email - Use Caution Thanks for your answer. For the most of the patients I just have T1 images. Isn't there any alternative to manually correction for this cases? Best regards, Maria El mié., 29 may. 2019 a las 15:39, Bruce Fischl () escribió: > Hi Maria > > yes, pot

Re: [Freesurfer] Bad segmentation in gadolinium MRI

2019-05-29 Thread Bruce Fischl
Hi Maria yes, potentially. What acqusitions do you have? Do you have a highres T2? You can erase the bright dura that is causing this effect manually if not cheers Bruce On Wed, 29 May 2019, María Martínez Rodrigo wrote: External Email - Use Caution Dear all, Some of my i