Re: [Freesurfer] Base Pial Surface Edits

2013-06-12 Thread Martin Reuter
Hi David, recon-all -base -autorecon-pial should be enough to pick up both edits (probably you already looked at the tutorial at http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial that describes most edits). Don't forget to re-run all longitudinals from scratch after you d

[Freesurfer] Base Pial Surface Edits

2013-06-06 Thread David Tate
We have recently run a set of longitudinal data (FreeSurfer5.3) and are making edits to the base pial surfaces. It is clear that there are two different ways of doing pial edits including: 1. editing the brainmask.mgz and 2. the brain.finalsurfs.mgz. I recognize that they are specific ways to