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Thanks, Douglas!
I found subcort.mask.mgz there, that should work (subcortical mask in MNI
space)!
Best,
Chao-Gan
On Wed, Nov 21, 2018 at 12:45 AM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> The masking is not done as part of the
The masking is not done as part of the correction for mult comp but when you
run mri_glmfit. When you run it on a volume, you have to specify the mask, so
the mask depends upon your application. For fsfast, the mask in
$FREESURFER_HOME/subjects/fsaverage/mri.2mm is used.
On 11/20/18 4:57 AM,
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Dear Douglas,
When doing --3spaces, is there a default subcortical mask in MNI space
provided by freesurfer? Where is it stored?
Thanks,
Chao-Gan
On Tue, Nov 20, 2018 at 10:12 AM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
>
>
> On
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Dear Douglas,
Thanks a lot for your reply! That's very clear!
Best,
Chao-Gan
On Tue, Nov 20, 2018 at 10:12 AM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
>
>
> On 11/16/18 7:34 PM, YAN Chao-Gan wrote:
>
> External Email - Use
On 11/16/18 7:34 PM, YAN Chao-Gan wrote:
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Dear freesurfer experts,
I have a pretty naive question but would like to confirm.
When we use --3spaces option in multiple comparison correction, does that mean
we set the Cluster-wise threshold (cwp, not Cluster
External Email - Use Caution
Dear freesurfer experts,
I have a pretty naive question but would like to confirm.
When we use --3spaces option in multiple comparison correction, does that
mean we set the Cluster-wise threshold (cwp, not Cluster Defining Threshold
or Cluster
